STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TBPL1TATA box-binding protein-like protein 1. (255 aa)    
Predicted Functional Partners:
GTF2B
Transcription initiation factor IIB.
   
 0.952
TAF2
Transcription initiation factor TFIID subunit 2.
    
 0.933
TAF10
Transcription initiation factor TFIID subunit 10.
    
 0.933
TAF7L
Transcription initiation factor TFIID subunit 7-like.
    
 0.933
TAF9B
Transcription initiation factor TFIID subunit 9B.
    
 0.933
TAF1
Transcription initiation factor TFIID subunit.
    
 0.933
TAF13
Transcription initiation factor TFIID subunit 13.
   
 0.931
TAF11
Transcription initiation factor TFIID subunit 11.
   
 0.931
BDP1-1
Transcription factor TFIIIB component B''-like protein isoform C.
    
 0.931
GTF2F2
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
    
 0.929
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.