STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NHSL1NHS-like protein 1 isoform C. (1713 aa)    
Predicted Functional Partners:
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 0.781
PBRM1
Protein polybromo-1 isoform A.
    
 0.769
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
    
 0.751
MYSM1
Histone H2A deubiquitinase MYSM1 isoform B.
   
 0.733
ACTL6A
Actin-like protein 6A; Belongs to the actin family.
    
 0.691
ACTL6B
Uncharacterized protein; Belongs to the actin family.
    
 0.691
SMARCD3
SWIB domain-containing protein.
   
 0.650
SMARCD2
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2.
   
 0.650
SMARCD2-2
SWIB domain-containing protein.
   
 0.650
ARID2
AT-rich interactive domain-containing protein 2.
    
 0.574
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.