STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0017862Uncharacterized protein. (2621 aa)    
Predicted Functional Partners:
CA4
Carbonic anhydrase 4; Belongs to the alpha-carbonic anhydrase family.
      
 0.716
Y1Q_0000798
Protein S100-A7-like.
      
 0.716
UBR3
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.713
Y1Q_0015997
Phospholipase A2.
      
 0.713
LGALS1
Galectin.
     
 0.713
Y1Q_0017438
Uncharacterized protein.
 
    
0.668
Y1Q_0006618
Plectin-like.
 
      0.630
ITGB4
Integrin beta.
   
 0.612
JUP
Uncharacterized protein.
   
 0.524
ITSN1
Intersectin-1.
    
 0.473
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.