STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VARSValine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (1092 aa)    
Predicted Functional Partners:
VARS-2
GST C-terminal domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
0.934
RPF2
Ribosome production factor 2-like protein.
 
 
  
 0.913
YARS
Tyrosine--tRNA ligase.
  
 
 0.912
EPRS
Bifunctional glutamate/proline--tRNA ligase isoform A.
  
 
 0.906
MARS
Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.890
DARS2
Aspartate--tRNA ligase, mitochondrial.
  
  
 0.846
LARS
Leucine--tRNA ligase, cytoplasmic isoform D; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
0.822
GMPS
GMP synthase [glutamine-hydrolyzing] isoform B.
  
  
 0.773
LARS2
Putative leucine--tRNA ligase, mitochondrial; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
0.773
PDCD11
RRP5-like protein.
  
  
 0.752
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.