STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0023213Ig-like domain-containing protein. (137 aa)    
Predicted Functional Partners:
Y1Q_0020557
Ig-like domain-containing protein.
  
  0.527
PLAT
Plasminogen activator; Belongs to the peptidase S1 family.
    
  0.524
Y1Q_0005957
Uncharacterized protein.
  
 0.509
KXD1
KxDL motif-containing protein 1.
    
  0.503
TFPI
Tissue factor pathway inhibitor.
    
  0.494
CD81
Tetraspanin.
    
  0.492
MAP2-1
Microtubule-associated protein.
    
   0.480
MAPT-1
Microtubule-associated protein.
    
   0.480
GNB4
Guanine nucleotide-binding protein subunit beta-4.
    
  0.465
GNB3
WD_REPEATS_REGION domain-containing protein.
    
  0.465
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.