STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1DET1-like protein. (551 aa)    
Predicted Functional Partners:
RFWD2
E3 ubiquitin-protein ligase RFWD2 isoform A.
    
 0.985
DDB1
DNA damage-binding protein 1.
    
 
 0.980
DDB2
DNA damage-binding protein 2.
     
 0.938
ERCC8
DNA excision repair protein ERCC-8.
     
  0.900
DDA1-1
DET1-and DDB1-associated protein 1 isoform C.
    
 
 0.804
CUL4B
Cullin-4B; Belongs to the cullin family.
    
 
 0.697
Y1Q_0015515
Cullin domain-containing protein; Belongs to the cullin family.
    
 
 0.697
CUL4A
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.697
RBX1
E3 ubiquitin-protein ligase RBX1.
    
 
 0.647
ETV1-1
ETS translocation variant 1.
    
 
 0.634
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.