STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YOD1Ubiquitin thioesterase OTU1. (304 aa)    
Predicted Functional Partners:
PLAA
Uncharacterized protein.
    
 
 0.975
UFD1L
Ubiquitin fusion degradation 1-like protein.
   
 
 0.975
VCP
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.957
SCARB1
Scavenger receptor class B member 1 isoform A.
    
 
 0.946
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1.
   
 0.919
SPATA5
Spermatogenesis-associated protein 5.
   
 0.919
UBE4B
Ubiquitin conjugation factor E4 B.
    
 
 0.894
RPS27A
Ubiquitin-40S ribosomal protein S27a.
   
 
 0.870
UBE4A
Ubiquitin conjugation factor E4 A.
    
 
 0.868
NSFL1C
NSFL1 cofactor p47.
   
 
 0.863
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.