Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PM20D1Putative carboxypeptidase PM20D1. (453 aa)    
Predicted Functional Partners:
ASS1
Argininosuccinate synthase.
  
 0.777
RAB29
Ras-related protein Rab-7L1.
      
 0.747
NUCKS1
Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1.
      
 0.725
GK5
Putative glycerol kinase 5 isoform A; Belongs to the FGGY kinase family.
   
  
 0.698
OTC
Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
    
 0.692
OAT
Ornithine aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
 0.642
ASL
Argininosuccinate lyase.
  
 
 0.587
SLC45A3
Solute carrier family 45 member 3.
      
 0.585
SUOX
Sulfite oxidase, mitochondrial.
  
  
 0.572
PSAT1
Phosphoserine aminotransferase.
    
 0.560
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (12%) [HD]