STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO1-1Rhombotin-1 isoform B. (156 aa)    
Predicted Functional Partners:
TAL1
T-cell acute lymphocytic leukemia protein 1.
    
 0.841
Y1Q_0006664
Uncharacterized protein.
    
 0.783
Y1Q_0011037
LID domain-containing protein.
    
 0.783
LDB1
LIM domain-binding protein 1 isoform C.
    
 0.783
TCF4
Transcription factor 4 isoform C.
    
 0.714
GATA3
Trans-acting T-cell-specific transcription factor GATA-3.
    
 0.671
RUNX1-2
Runt domain-containing protein.
     
 0.644
CBFB
Core-binding factor subunit beta.
    
 0.587
GATA1
Erythroid transcription factor.
    
 0.574
CDK7
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
     
 0.574
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.