Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MLF2-1Myeloid leukemia factor 2 isoform A. (243 aa)    
Predicted Functional Partners:
STUB1
E3 ubiquitin-protein ligase CHIP isoform A.
   
   0.855
USP5-2
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.745
EDF1
Endothelial differentiation-related factor 1.
   
  
 0.736
DNAJC7
DnaJ-like protein subfamily C member 7.
   
 
 0.710
EMC7
ER membrane protein complex subunit 7.
   
  
 0.700
BAG3
BAG family molecular chaperone regulator 3.
    
 
 0.695
DNAJB8
DnaJ-like protein subfamily B member 8.
   
 
 0.690
DNAJB6
DnaJ-like protein subfamily B member 6.
   
 
 0.690
CUNH1orf43
Uncharacterized protein.
   
  
 0.682
COPS7A
COP9 signalosome complex subunit 7a.
   
  
 0.642
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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