STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIMD4Hepatitis A virus cellular receptor 1. (448 aa)    
Predicted Functional Partners:
PPP1R11
Protein phosphatase 1 regulatory subunit 11.
      
 0.615
SETD4
SET domain-containing protein 4.
      
 0.615
PPP1R8
Nuclear inhibitor of protein phosphatase 1.
      
 0.539
SGCD
Delta-sarcoglycan.
      
 0.538
SGCZ
Zeta-sarcoglycan.
      
 0.538
MRPS23
28S ribosomal protein S23, mitochondrial.
      
 0.487
SLC5A7
High affinity choline transporter 1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.461
SLC5A7L
High affinity choline transporter 1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.461
CASK
Peripheral plasma membrane protein CASK isoform B; Belongs to the MAGUK family.
    
 0.460
PCDH9-2
Uncharacterized protein.
    
 0.438
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.