STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ODF2Outer dense fiber protein 2. (889 aa)    
Predicted Functional Partners:
UNC79
Unc-79-like protein isoform B.
    
 0.782
MNS1
Meiosis-specific nuclear structural protein 1.
   
 0.721
RAB3IP
Rab-3A-interacting protein.
    
 0.718
PLK1
Serine/threonine-protein kinase PLK.
    
 0.707
MARCH10
Putative E3 ubiquitin-protein ligase MARCH10.
      
 0.575
NT5C1B-1
Cytosolic 5'-nucleotidase 1B isoform B.
    
 0.543
CFAP161
Uncharacterized protein.
    
 0.536
RAB3IL1-1
Guanine nucleotide exchange factor for Rab-3A isoform B.
    
 0.516
RANBP2
E3 SUMO-protein ligase RanBP2.
    
  0.513
CEP164
Centrosomal protein of isoform A.
    
 
 0.510
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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