STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0015866Uncharacterized protein. (160 aa)    
Predicted Functional Partners:
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.620
Y1Q_0010108
Uncharacterized protein.
  
     0.488
RPL21
60S ribosomal protein L21.
   
   0.486
Y1Q_0004873
Uncharacterized protein.
  
     0.483
Y1Q_0019866
Uncharacterized protein.
  
     0.483
Y1Q_0023161
Uncharacterized protein.
  
     0.480
MRPL2
39S ribosomal protein L2, mitochondrial isoform A.
   
 
 0.478
Y1Q_0017963
Uncharacterized protein.
  
     0.478
Y1Q_0017622
Uncharacterized protein.
 
     0.473
Y1Q_0023038
Uncharacterized protein.
  
     0.473
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.