STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCBTB1RCC1 and BTB domain-containing protein 1. (566 aa)    
Predicted Functional Partners:
RANBP2
E3 SUMO-protein ligase RanBP2.
   
 0.592
CCDC106-1
Coiled-coil domain-containing protein 106 isoform B.
      
 0.581
NAA60
N-alpha-acetyltransferase 60.
   
  
 0.546
FBXO9
F-box only protein 9 isoform A.
     
 0.544
MORF4L1
Mortality factor 4-like protein 1 isoform B.
   
  
 0.541
GTF3C1
General transcription factor 3C polypeptide 1 isoform B.
      
 0.540
NUDT13
Nucleoside diphosphate-linked moiety X motif 13.
      
 0.539
ZFAND4
AN1-type zinc finger protein 4 isoform A.
    
 0.513
IP6K2
Kinase; Belongs to the inositol phosphokinase (IPK) family.
      
 0.509
DPH3
DPH3-like protein.
    
 
 0.468
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.