STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0019888Uncharacterized protein. (571 aa)    
Predicted Functional Partners:
Y1Q_0019887
BAH domain-containing protein.
 
     0.950
BAHCC1-1
BAH and coiled-coil domain-containing protein 1 isoform B.
 
    0.950
UNC79
Unc-79-like protein isoform B.
    
 0.782
RANBP2
E3 SUMO-protein ligase RanBP2.
    
  0.513
DNPEP
Aspartyl aminopeptidase; Belongs to the peptidase M18 family.
    
 
 0.500
NCAPH2
Condensin-2 complex subunit H2.
      
 0.443
KDM6B-2
Uncharacterized protein.
    
 0.441
KDM6B
Lysine-specific demethylase 6B isoform A.
    
 0.441
RBBP5
Retinoblastoma-binding protein 5 isoform B.
    
 0.428
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.426
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.