Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LARP7La-related protein 7. (590 aa)    
Predicted Functional Partners:
MEPCE
7SK snRNA methylphosphate capping enzyme.
   
 
 0.994
CDK9
Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.
   
 0.983
CCNT1
Cyclin-T1; Belongs to the cyclin family.
   
 0.983
HEXIM1
Protein HEXIM1.
    
 
 0.981
CCNT2
Cyclin-T2 isoform B; Belongs to the cyclin family.
   
 0.961
SART3
Squamous cell carcinoma antigen recognized by T-cells 3.
   
 0.934
SF3B1
Splicing factor 3B subunit 1.
   
 0.890
NCL
Nucleolin.
   
 0.882
TUT1
Speckle targeted PIP5K1A-regulated poly(A) polymerase.
    
 0.875
PPIH
Peptidyl-prolyl cis-trans isomerase H.
   
 0.868
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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