STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LARP7La-related protein 7. (590 aa)    
Predicted Functional Partners:
MEPCE
7SK snRNA methylphosphate capping enzyme.
    
 
 0.952
CDK9
Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.
   
 0.930
CCNT1
Cyclin-T1; Belongs to the cyclin family.
   
 0.870
HEXIM1
Protein HEXIM1.
    
 
 0.851
CCNT2
Cyclin-T2 isoform B; Belongs to the cyclin family.
   
 0.783
TOB2
Protein Tob2.
    
 
 0.669
SART3
Squamous cell carcinoma antigen recognized by T-cells 3.
   
 0.639
DDX18
RNA helicase.
   
 0.616
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.604
LYAR
Cell growth-regulating nucleolar protein.
   
  
 0.597
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.