STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PADI1Uncharacterized protein. (667 aa)    
Predicted Functional Partners:
HIST2H3D
Histone H3; Belongs to the histone H3 family.
    
 0.557
H3F3B
Histone H3; Belongs to the histone H3 family.
    
 0.555
EXTL1
Exostosin-like 1; Belongs to the glycosyltransferase 47 family.
      
 0.465
SERINC4
Serine incorporator 4.
      
 0.460
SERPINA10
Protein Z-dependent protease inhibitor; Belongs to the serpin family.
     
 0.429
TECTA-2
Alpha-tectorin isoform B.
      
 0.408
Y1Q_0018514
Uncharacterized protein.
      
 0.408
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.