STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCO1Single-pass membrane and coiled-coil domain-containing protein 1. (238 aa)    
Predicted Functional Partners:
UBXN7
UBX domain-containing protein 7.
      
 0.716
WDR53
WD repeat-containing protein 53.
      
 0.542
PIGX
Phosphatidylinositol-glycan biosynthesis class X protein.
      
 0.540
ZDHHC19
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.540
PCYT1A
Choline-phosphate cytidylyltransferase A.
      
 0.512
UPK2
Uroplakin-2.
  
     0.450
TCTEX1D2
Tctex1 domain-containing protein 2.
      
 0.437
CEP19
Centrosomal protein of.
      
 0.414
TM4SF19
Transmembrane 4 L6 family member 19.
      
 0.406
SLC51A
Organic solute transporter subunit alpha.
      
 0.406
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.