STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKD2L1Uncharacterized protein. (858 aa)    
Predicted Functional Partners:
PKDREJ
Polycystic kidney disease and receptor for egg jelly-related protein.
    
 0.812
Y1Q_0010314
Uncharacterized protein.
 
  
 
 0.763
PKD1
Polycystin-1.
    
0.761
Y1Q_0016466
Uncharacterized protein.
    
0.761
PKD1L2
Polycystic kidney disease protein 1-like 2 isoform A.
    
 
0.742
Y1Q_0016940
Polycystic kidney disease protein 1-like 3.
 
  
 
 0.742
BLOC1S2-1
Biogenesis of lysosome-related organelles complex 1 subunit 2 isoform B.
      
 0.731
SCNN1B
Amiloride-sensitive sodium channel subunit beta; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
      
 0.730
EXOC5
Exocyst complex component 5.
     
 0.689
IBSP
Bone sialoprotein 2.
    
 
 0.668
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.