STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PARP8Poly [ADP-ribose] polymerase. (620 aa)    
Predicted Functional Partners:
RPL5
60S ribosomal protein L5.
  
 
 0.871
RPL11-1
60S ribosomal protein L11 isoform A; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.860
RPL23A
60S ribosomal protein L23a.
  
 
 0.860
RPL23
60S ribosomal protein L23 isoform A; Belongs to the universal ribosomal protein uL14 family.
  
   0.827
ARL6IP1
ADP-ribosylation factor-like protein 6-interacting protein 1; Belongs to the universal ribosomal protein uS8 family.
  
 
 0.824
RPS3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.819
RPL35
60S ribosomal protein L35.
  
   0.808
GPI
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.807
RPS4X
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
  
   0.803
RPL15
Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.797
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.