STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIPCCLOCK-interacting pacemaker. (185 aa)    
Predicted Functional Partners:
ITGB1BP1
Integrin beta-1-binding protein 1.
      
 0.700
MSRA
Mitochondrial peptide methionine sulfoxide reductase isoform C.
      
 0.683
GPR112
Adhesion G-protein coupled receptor G4; Belongs to the G-protein coupled receptor 2 family.
      
 0.584
E2F6-1
Transcription factor E2F6 isoform C.
      
 0.554
ARNTL
Aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform B.
    
 
 0.479
C1R
Complement C1r subcomponent; Belongs to the peptidase S1 family.
      
 0.468
CD86
T-lymphocyte activation antigen CD86.
  
     0.467
C1S
Complement C1s subcomponent; Belongs to the peptidase S1 family.
      
 0.467
CDCA8
Borealin.
  
  
  0.444
PASD1-2
Uncharacterized protein.
    
 
 0.439
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.