Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ALKBH6Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 6. (200 aa)    
Predicted Functional Partners:
ALKBH1
Alkylated DNA repair alkB-like protein 1.
   
  
 0.888
RSU1
Ras suppressor protein 1.
      
 0.878
MED29
Mediator of RNA polymerase II transcription subunit 29.
    
 
 0.737
ALKBH4
Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 4.
      
 0.733
ALKBH2
Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 2.
      
 0.693
VPS51
Vacuolar sorting-associated protein 51-like protein.
      
 0.689
DHX30
Putative ATP-dependent RNA helicase DHX30 isoform A.
      
 0.618
RNF43
E3 ubiquitin-protein ligase RNF43.
      
 0.594
BRD7
Bromodomain-containing protein 7 isoform A.
      
 0.579
RNF121
RING finger protein 121.
      
 0.572
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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