STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0001851Protein kinase domain-containing protein. (466 aa)    
Predicted Functional Partners:
GRIN2B-2
Uncharacterized protein.
   
 0.736
GRIA4
Glutamate receptor 4 isoform C.
   
 0.695
CALM1
Calmodulin; Belongs to the calmodulin family.
   
 0.690
Y1Q_0015340
Uncharacterized protein.
   
 0.690
Y1Q_0023495
Calmodulin-alpha-like; Belongs to the calmodulin family.
   
 0.690
CALM3
Uncharacterized protein; Belongs to the calmodulin family.
   
 0.690
EFCAB3-1
EF-hand calcium-binding domain-containing protein 3 isoform C.
   
 0.690
APBA1
Uncharacterized protein.
   
 0.678
APBA2-2
Uncharacterized protein.
   
 0.678
APBA2
Amyloid beta A4 protein-binding family A member 2.
   
 0.678
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.