STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YJEFN3YjeF N-terminal domain-containing protein 3. (246 aa)    
Predicted Functional Partners:
DCP2
M7GpppN-mRNA hydrolase isoform B.
  
 0.935
DDX6
Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.
   
 0.933
PNPO
Pyridoxine-5'-phosphate oxidase.
    
 0.908
CARKD
ATP-dependent (S)-NAD(P)H-hydrate dehydratase; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ATP, which is converted to ADP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.
  
 
 0.850
DCP1A
mRNA-decapping enzyme 1A.
   
 0.820
DCP1B-1
mRNA-decapping enzyme 1B isoform A.
   
 0.820
EDC4
Enhancer of mRNA-decapping protein 4.
   
 0.803
PATL2-1
PAT1-like protein 2 isoform B.
    
 0.768
PATL1
PAT1-like protein 1.
    
 0.768
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.733
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.