Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IQCCIQ domain-containing protein C. (228 aa)    
Predicted Functional Partners:
CCHCR1-1
Coiled-coil alpha-helical rod protein 1 isoform C.
    
 
 0.839
NAV3
Neuron navigator 3 isoform B.
      
 0.756
PROSER3
Proline and serine-rich protein 3.
    
 
 0.699
Y1Q_0009782
Acyl_transf_3 domain-containing protein.
      
 0.629
Y1Q_0009781
NRF domain-containing protein.
      
 0.629
DLGAP5
Disks large-associated protein 5.
      
 0.589
SDF2
Stromal cell-derived factor 2.
      
 0.554
SDF2L1
Stromal cell-derived factor 2-like protein 1.
      
 0.554
DHDDS
Alkyl transferase; Belongs to the UPP synthase family.
      
 0.470
DDOST
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit isoform A; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.459
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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