STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPP1R42LProtein phosphatase 1 regulatory subunit 42. (308 aa)    
Predicted Functional Partners:
COPS2
COP9 signalosome complex subunit 2 isoform B.
   
 0.928
COPS6
COP9 signalosome complex subunit 6.
   
 0.927
COPS3
COP9 signalosome complex subunit 3.
   
 0.923
GPS1
COP9 signalosome complex subunit 1 isoform A.
   
 0.917
COPS5
COP9 signalosome complex subunit 5.
 
      0.899
PPP1R42
Protein phosphatase 1 regulatory subunit 42.
 
      0.898
NEDD8
NEDD8.
   
 0.880
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.876
PSMD12
26S proteasome non-ATPase regulatory subunit 12.
   
 0.843
PSMD6
26S proteasome non-ATPase regulatory subunit 6.
   
 0.838
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.