STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFX1Transcriptional repressor NF-X1 isoform D. (1366 aa)    
Predicted Functional Partners:
NXT2
NTF2-related export protein 2.
      
 0.672
SPINK4
Serine protease inhibitor Kazal-type 4.
      
 0.666
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
   0.641
RSRC1
Serine/Arginine-related protein 53.
    
 
 0.608
FKBP3
Peptidylprolyl isomerase.
   
 
 0.592
FKBP1B
Peptidylprolyl isomerase.
   
 
 0.592
CHMP5
Charged multivesicular body protein 5.
      
 0.584
RPL23A
60S ribosomal protein L23a.
    
 
 0.573
RPS19
40S ribosomal protein S19.
    
   0.571
RPS13
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
    
   0.571
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.