STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0019087Uncharacterized protein. (152 aa)    
Predicted Functional Partners:
HGS
Hepatocyte growth factor-regulated tyrosine kinase substrate isoform B.
   
 0.954
ITSN1
Intersectin-1.
    
 0.938
STAM-2
Uncharacterized protein.
 
      0.899
RPS27A
Ubiquitin-40S ribosomal protein S27a.
   
 0.891
SCARB1
Scavenger receptor class B member 1 isoform A.
   
 0.872
TSG101
Tumor susceptibility 101 protein.
   
 0.846
MYSM1
Histone H2A deubiquitinase MYSM1 isoform B.
    
 0.824
STAMBP
STAM-binding protein.
    
 0.817
STAMBPL1
AMSH-like protease.
    
 0.817
USP8
Ubiquitin carboxyl-terminal hydrolase 8 isoform A; Belongs to the peptidase C19 family.
    
 0.811
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.