STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0020466Uncharacterized protein. (115 aa)    
Predicted Functional Partners:
CD48
CD48 antigen.
   
 0.758
Y1Q_0016225
Natural killer cell receptor 2B4-like.
   
 0.758
SLAMF8
SLAM family member 8.
   
 0.758
SH2D1A
SH2 domain-containing protein 1A.
   
 0.695
CD84-1
SLAM family member 5 isoform A.
   
 0.588
Y1Q_0008386
SLAM family member 5-like.
   
 0.588
LY9
T-lymphocyte surface antigen Ly-9.
   
 0.567
Y1Q_0019953
Helicase ATP-binding domain-containing protein.
    
 0.549
FANCM-1
Fanconi anemia group M protein isoform B.
    
 0.549
Y1Q_0016226
SLAM family member 9-like.
   
 0.547
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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