STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NKD1Naked cuticle-like protein 1 isoform A. (361 aa)    
Predicted Functional Partners:
DVL1
Uncharacterized protein.
    
 0.963
DVL3
Segment polarity dishevelled-like protein DVL-3 isoform B.
    
 0.963
DVL3L
Segment polarity dishevelled-like protein DVL-3.
    
 
 0.654
BRD7
Bromodomain-containing protein 7 isoform A.
      
 0.606
ROBO4
Roundabout-like protein 4 isoform A.
   
  
 0.596
EPB41L4B
Band 4.1-like protein 4B isoform B.
      
 0.591
CDC42SE2
CDC42 small effector protein 2.
      
 0.591
DUSP4
Dual specificity protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
      
 0.591
EPHA7
Uncharacterized protein.
    
 
 0.591
NDP
Norrin.
      
 0.591
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.