GRID1 protein (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GRID1

Glutamate receptor ionotropic, delta-1. (195 aa)

Predicted Functional Partners:

GRID1L

0.962

GRID1-2

0.900

Y1Q_0017055

0.869

Y1Q_0005312

0.644

SETBP1

0.617

RPTOR

0.512

ARHGAP42

0.502

IMMP2L

0.499

GRIN1

0.480

SCD5

0.476

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP42	GRID1	A0A151M6S5	A0A151MTE4	Rho GTPase-activating protein 42 isoform B.	Glutamate receptor ionotropic, delta-1.	0.502
ARHGAP42	GRID1-2	A0A151M6S5	A0A151MTD9	Rho GTPase-activating protein 42 isoform B.	Uncharacterized protein.	0.526
ARHGAP42	IMMP2L	A0A151M6S5	A0A151PF60	Rho GTPase-activating protein 42 isoform B.	Mitochondrial inner membrane protease subunit 2 isoform A.	0.664
ARHGAP42	RPTOR	A0A151M6S5	A0A151P451	Rho GTPase-activating protein 42 isoform B.	Regulatory-associated protein of mTOR isoform A.	0.707
ARHGAP42	SETBP1	A0A151M6S5	A0A151MWC3	Rho GTPase-activating protein 42 isoform B.	SET-binding protein.	0.664
GRID1	ARHGAP42	A0A151MTE4	A0A151M6S5	Glutamate receptor ionotropic, delta-1.	Rho GTPase-activating protein 42 isoform B.	0.502
GRID1	GRID1-2	A0A151MTE4	A0A151MTD9	Glutamate receptor ionotropic, delta-1.	Uncharacterized protein.	0.900
GRID1	GRID1L	A0A151MTE4	A0A151NML4	Glutamate receptor ionotropic, delta-1.	Glutamate receptor ionotropic, delta-1; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.962
GRID1	GRIN1	A0A151MTE4	A0A151MET0	Glutamate receptor ionotropic, delta-1.	Glutamate receptor ionotropic, NMDA 1 isoform A.	0.480
GRID1	IMMP2L	A0A151MTE4	A0A151PF60	Glutamate receptor ionotropic, delta-1.	Mitochondrial inner membrane protease subunit 2 isoform A.	0.499
GRID1	RPTOR	A0A151MTE4	A0A151P451	Glutamate receptor ionotropic, delta-1.	Regulatory-associated protein of mTOR isoform A.	0.512
GRID1	SCD5	A0A151MTE4	A0A151P120	Glutamate receptor ionotropic, delta-1.	Stearoyl-CoA desaturase 5; Belongs to the fatty acid desaturase type 1 family.	0.476
GRID1	SETBP1	A0A151MTE4	A0A151MWC3	Glutamate receptor ionotropic, delta-1.	SET-binding protein.	0.617
GRID1	Y1Q_0005312	A0A151MTE4	A0A151MTD5	Glutamate receptor ionotropic, delta-1.	Uncharacterized protein.	0.644
GRID1	Y1Q_0017055	A0A151MTE4	A0A151NVB3	Glutamate receptor ionotropic, delta-1.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.869
GRID1-2	ARHGAP42	A0A151MTD9	A0A151M6S5	Uncharacterized protein.	Rho GTPase-activating protein 42 isoform B.	0.526
GRID1-2	GRID1	A0A151MTD9	A0A151MTE4	Uncharacterized protein.	Glutamate receptor ionotropic, delta-1.	0.900
GRID1-2	IMMP2L	A0A151MTD9	A0A151PF60	Uncharacterized protein.	Mitochondrial inner membrane protease subunit 2 isoform A.	0.503
GRID1-2	RPTOR	A0A151MTD9	A0A151P451	Uncharacterized protein.	Regulatory-associated protein of mTOR isoform A.	0.516
GRID1-2	SCD5	A0A151MTD9	A0A151P120	Uncharacterized protein.	Stearoyl-CoA desaturase 5; Belongs to the fatty acid desaturase type 1 family.	0.476