STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DPF3-1Zinc finger protein DPF3 isoform A. (378 aa)    
Predicted Functional Partners:
PBRM1
Protein polybromo-1 isoform A.
    
 
 0.867
ARID1B-2
ARID domain-containing protein.
    
 0.822
BRD9
Bromodomain-containing protein 9 isoform B.
    
 
 0.795
BRD7
Bromodomain-containing protein 7 isoform A.
    
 
 0.769
ARID1B
AT-rich interactive domain-containing protein 1B.
    
 
 0.734
SMARCE1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
   
 
 0.686
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
   
 
 0.667
SS18L1
Calcium-responsive transactivator.
    
 
 0.661
BCL7A
B-cell CLL/lymphoma 7 protein family member A.
    
 
 0.660
SMARCD3
SWIB domain-containing protein.
   
 0.650
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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