STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPQCarboxypeptidase Q. (505 aa)    
Predicted Functional Partners:
PM20D1
Putative carboxypeptidase PM20D1.
     
 0.574
EPOR
Erythropoietin receptor isoform B.
    
 0.571
MTDH
Protein LYRIC.
   
 
 0.570
LAPTM4B
Lysosomal-associated transmembrane protein 4B isoform B.
    
 
 0.551
NR13
Anti-apoptotic protein NR13.
      
 0.539
Y1Q_0020180
FH2 domain-containing protein 1-like.
    
 0.527
HABP2
Hyaluronan-binding protein 2.
    
 0.512
TRIP11
Thyroid receptor-interacting protein 11.
    
 0.482
BTD
Biotinidase.
   
  
 0.481
COMTD1
Catechol O-methyltransferase domain-containing protein 1.
   
  
 0.470
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.