STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NXF1Nuclear RNA export factor 1 isoform A. (385 aa)    
Predicted Functional Partners:
NXT2
NTF2-related export protein 2.
    
 0.995
ALYREF
THO complex subunit 4.
    
 0.995
NXF1L
Nuclear RNA export factor 1.
 
  
  0.991
RAE1
mRNA export factor.
    
 0.984
RANBP2
E3 SUMO-protein ligase RanBP2.
    
 0.983
THOC5
THO complex subunit 5-like protein.
    
 0.971
EIF4A3-2
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.965
UPF3B
Regulator of nonsense transcripts 3B.
    
 0.961
SRSF3
Serine/arginine-rich splicing factor 3.
    
 0.960
SRSF5
Serine/arginine-rich splicing factor 5.
   
 0.958
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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