STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0023186Uncharacterized protein. (1015 aa)    
Predicted Functional Partners:
ELN-1
Elastin isoform A.
   
 0.657
FBN1
Uncharacterized protein.
   
 
0.649
FBLN1
Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes.
  
0.641
MFAP5
Microfibrillar-associated protein 5.
   
 
 0.589
ACAN
Aggrecan core protein.
    
 0.582
VTN
Vitronectin.
    
 0.560
Y1Q_0021968
Basement membrane-specific heparan sulfate proteoglycan core protein-like.
   
 0.463
HSPG2-2
Basement membrane-specific heparan sulfate proteoglycan core protein.
   
 0.463
HSPG2
Basement membrane-specific heparan sulfate proteoglycan core protein isoform A.
   
 0.463
Y1Q_0015918
Uncharacterized protein.
   
 0.463
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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