FDX1L protein (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

FDX1L

Adrenodoxin-like protein, mitochondrial. (172 aa)

Predicted Functional Partners:

ISCU

0.895

NFS1

0.880

NDUFS2

0.843

FADS6

0.838

FDXR

0.838

NDUFS3

0.798

Y1Q_0005511

0.772

SCLY

0.769

LYRM4

0.756

NDUFV1

0.748

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FADS6	FDX1L	A0A151N2X5	A0A151N155	Fatty acid desaturase 6.	Adrenodoxin-like protein, mitochondrial.	0.838
FADS6	ISCU	A0A151N2X5	A0A151NS27	Fatty acid desaturase 6.	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.480
FADS6	LYRM4	A0A151N2X5	A0A151NFI0	Fatty acid desaturase 6.	LYR motif-containing protein 4; Belongs to the complex I LYR family.	0.538
FADS6	NDUFS2	A0A151N2X5	A0A151PFP1	Fatty acid desaturase 6.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.478
FADS6	NDUFV1	A0A151N2X5	A0A151N3C6	Fatty acid desaturase 6.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial.	0.539
FADS6	NFS1	A0A151N2X5	A0A151NW18	Fatty acid desaturase 6.	Cysteine desulfurase, mitochondrial.	0.558
FDX1L	FADS6	A0A151N155	A0A151N2X5	Adrenodoxin-like protein, mitochondrial.	Fatty acid desaturase 6.	0.838
FDX1L	FDXR	A0A151N155	A0A151N3G9	Adrenodoxin-like protein, mitochondrial.	NADPH:adrenodoxin oxidoreductase, mitochondrial.	0.838
FDX1L	ISCU	A0A151N155	A0A151NS27	Adrenodoxin-like protein, mitochondrial.	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.895
FDX1L	LYRM4	A0A151N155	A0A151NFI0	Adrenodoxin-like protein, mitochondrial.	LYR motif-containing protein 4; Belongs to the complex I LYR family.	0.756
FDX1L	NDUFS2	A0A151N155	A0A151PFP1	Adrenodoxin-like protein, mitochondrial.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.843
FDX1L	NDUFS3	A0A151N155	A0A151MB35	Adrenodoxin-like protein, mitochondrial.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial; Belongs to the complex I 30 kDa subunit family.	0.798
FDX1L	NDUFV1	A0A151N155	A0A151N3C6	Adrenodoxin-like protein, mitochondrial.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial.	0.748
FDX1L	NFS1	A0A151N155	A0A151NW18	Adrenodoxin-like protein, mitochondrial.	Cysteine desulfurase, mitochondrial.	0.880
FDX1L	SCLY	A0A151N155	A0A151NTW5	Adrenodoxin-like protein, mitochondrial.	Selenocysteine lyase.	0.769
FDX1L	Y1Q_0005511	A0A151N155	A0A151MF71	Adrenodoxin-like protein, mitochondrial.	Cholesterol 7-desaturase-like.	0.772
FDXR	FDX1L	A0A151N3G9	A0A151N155	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Adrenodoxin-like protein, mitochondrial.	0.838
FDXR	ISCU	A0A151N3G9	A0A151NS27	NADPH:adrenodoxin oxidoreductase, mitochondrial.	Iron-sulfur cluster assembly enzyme ISCU, mitochondrial; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.	0.480
FDXR	LYRM4	A0A151N3G9	A0A151NFI0	NADPH:adrenodoxin oxidoreductase, mitochondrial.	LYR motif-containing protein 4; Belongs to the complex I LYR family.	0.538
FDXR	NDUFS2	A0A151N3G9	A0A151PFP1	NADPH:adrenodoxin oxidoreductase, mitochondrial.	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial; Belongs to the complex I 49 kDa subunit family.	0.478