STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PARNPoly(A)-specific ribonuclease PARN. (638 aa)    
Predicted Functional Partners:
PNLDC1
Poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform B.
  
  
0.908
DCP2
M7GpppN-mRNA hydrolase isoform B.
     
 0.751
EXOSC5
Exosome complex component RRP46.
     
 0.704
DIS3L2
RNB domain-containing protein.
   
 
 0.697
WRAP53
Telomerase Cajal body protein 1 isoform B; Belongs to the tumor necrosis factor family.
   
  
 0.683
EXOSC3
Exosome complex component RRP40.
     
 0.681
EXOSC4
Exosome complex component RRP41.
     
 0.680
XRN1
5'-3' exoribonuclease 1.
      
 0.660
DIS3
Exosome complex exonuclease RRP44; Belongs to the RNR ribonuclease family.
   
 
 0.655
CTC1
CST complex subunit CTC1.
      
 0.636
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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