STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0008257Uncharacterized protein. (167 aa)    
Predicted Functional Partners:
MGRN1
E3 ubiquitin-protein ligase MGRN1 isoform A.
      
 0.656
SETD5
SET domain-containing protein 5.
      
 0.549
FAM20B
Glycosaminoglycan xylosylkinase.
      
 0.543
VWA3A
Von Willebrand factor A domain-containing protein 3A.
 
    
 0.543
PLOD1
Fe2OG dioxygenase domain-containing protein.
   
 0.424
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform A.
   
 0.424
OGFOD2-1
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2 isoform B.
   
 0.424
PLOD3
Fe2OG dioxygenase domain-containing protein.
   
 0.424
TDG
G/T mismatch-specific thymine DNA glycosylase.
      
 0.404
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.