STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRIM67Tripartite motif-containing protein 67 isoform C. (800 aa)    
Predicted Functional Partners:
BTRC
F-box/WD repeat-containing protein 1A isoform B.
    
 0.681
NEO1
Uncharacterized protein.
   
 
 0.653
DCC
Netrin receptor DCC isoform B.
   
 
 0.653
PRTG
Protogenin.
   
 
 0.651
VASP
Vasodilator-stimulated phosphoprotein.
    
 
 0.612
Y1Q_0004859
Uncharacterized protein.
    
 0.563
TRIM44
Tripartite motif-containing protein 44.
    
 
 0.557
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
 0.533
BBOX1
Gamma-butyrobetaine dioxygenase isoform B.
      
 0.509
TRIM14
Tripartite motif-containing protein 14.
      
 0.450
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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