CHD5 protein (Alligator mississippiensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CHD5

Uncharacterized protein. (1864 aa)

Predicted Functional Partners:

RBBP4-2

0.780

RBBP4

0.780

GATAD2A

0.779

GATAD2B

0.774

MBD2

0.756

MBD3

0.756

ARID4A

0.704

Y1Q_0014762

0.704

ARID4B

0.704

MTA2

0.693

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	A0A151M1U2	A0A151M2T3	AT-rich interactive domain-containing protein 4A isoform A.	AT-rich interactive domain-containing protein 4B isoform B.	0.767
ARID4A	CHD5	A0A151M1U2	A0A151N3K5	AT-rich interactive domain-containing protein 4A isoform A.	Uncharacterized protein.	0.704
ARID4A	GATAD2A	A0A151M1U2	A0A151MM98	AT-rich interactive domain-containing protein 4A isoform A.	Transcriptional repressor p66-alpha isoform C.	0.613
ARID4A	GATAD2B	A0A151M1U2	A0A151PIY7	AT-rich interactive domain-containing protein 4A isoform A.	Transcriptional repressor p66-beta isoform B.	0.613
ARID4A	MBD2	A0A151M1U2	A0A151MWN4	AT-rich interactive domain-containing protein 4A isoform A.	Methyl-CpG-binding domain protein 2.	0.640
ARID4A	MBD3	A0A151M1U2	A0A151NHL4	AT-rich interactive domain-containing protein 4A isoform A.	Methyl-CpG-binding domain protein 3.	0.640
ARID4A	MTA2	A0A151M1U2	A0A151M3Y3	AT-rich interactive domain-containing protein 4A isoform A.	Uncharacterized protein.	0.641
ARID4A	RBBP4	A0A151M1U2	A0A151N0F6	AT-rich interactive domain-containing protein 4A isoform A.	Histone-binding protein RBBP4.	0.986
ARID4A	RBBP4-2	A0A151M1U2	A0A151MMQ9	AT-rich interactive domain-containing protein 4A isoform A.	WD_REPEATS_REGION domain-containing protein.	0.986
ARID4A	Y1Q_0014762	A0A151M1U2	A0A151M1U6	AT-rich interactive domain-containing protein 4A isoform A.	Tudor domain-containing protein.	0.973
ARID4B	ARID4A	A0A151M2T3	A0A151M1U2	AT-rich interactive domain-containing protein 4B isoform B.	AT-rich interactive domain-containing protein 4A isoform A.	0.767
ARID4B	CHD5	A0A151M2T3	A0A151N3K5	AT-rich interactive domain-containing protein 4B isoform B.	Uncharacterized protein.	0.704
ARID4B	GATAD2A	A0A151M2T3	A0A151MM98	AT-rich interactive domain-containing protein 4B isoform B.	Transcriptional repressor p66-alpha isoform C.	0.615
ARID4B	GATAD2B	A0A151M2T3	A0A151PIY7	AT-rich interactive domain-containing protein 4B isoform B.	Transcriptional repressor p66-beta isoform B.	0.615
ARID4B	MBD2	A0A151M2T3	A0A151MWN4	AT-rich interactive domain-containing protein 4B isoform B.	Methyl-CpG-binding domain protein 2.	0.640
ARID4B	MBD3	A0A151M2T3	A0A151NHL4	AT-rich interactive domain-containing protein 4B isoform B.	Methyl-CpG-binding domain protein 3.	0.640
ARID4B	MTA2	A0A151M2T3	A0A151M3Y3	AT-rich interactive domain-containing protein 4B isoform B.	Uncharacterized protein.	0.645
ARID4B	RBBP4	A0A151M2T3	A0A151N0F6	AT-rich interactive domain-containing protein 4B isoform B.	Histone-binding protein RBBP4.	0.986
ARID4B	RBBP4-2	A0A151M2T3	A0A151MMQ9	AT-rich interactive domain-containing protein 4B isoform B.	WD_REPEATS_REGION domain-containing protein.	0.986
ARID4B	Y1Q_0014762	A0A151M2T3	A0A151M1U6	AT-rich interactive domain-containing protein 4B isoform B.	Tudor domain-containing protein.	0.549