STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ROGDIRogdi-like protein. (286 aa)    
Predicted Functional Partners:
DMXL2
DmX-like protein 2.
    
 
 0.879
Y1Q_0001469
WD_REPEATS_REGION domain-containing protein.
    
 
 0.879
ATP6V1E1
V-type proton ATPase subunit E 1.
    
 
 0.775
GLYR1
Putative oxidoreductase GLYR1.
 
      0.714
ACOX2
Uncharacterized protein.
      
 0.667
ADSL
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
      
 0.666
ZNHIT1
Zinc finger HIT domain-containing protein 1.
      
 0.606
SMYD4
SET and MYND domain-containing protein 4.
      
 0.600
ATP6V1B2
Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.
   
 
 0.595
Y1Q_0000203
ATP-synt_ab_N domain-containing protein.
   
 
 0.595
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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