STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD5Programmed cell death protein 5. (126 aa)    
Predicted Functional Partners:
SNRPE
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
    0.858
RPS19
40S ribosomal protein S19.
  
    0.822
RPS11
40S ribosomal protein S11 isoform A; Belongs to the universal ribosomal protein uS17 family.
   
    0.817
RPL23
60S ribosomal protein L23 isoform A; Belongs to the universal ribosomal protein uL14 family.
   
  
 0.802
RPL30
60S ribosomal protein L30.
   
    0.799
RPL35
60S ribosomal protein L35.
   
    0.794
RPS3
40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
  
 0.787
RPL34
60S ribosomal protein L34.
   
    0.785
RPS4X
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.
   
    0.768
RPL23A
60S ribosomal protein L23a.
   
    0.758
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.