STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F9Coagulation factor IX. (474 aa)    
Predicted Functional Partners:
SERPINC1
Antithrombin-III; Belongs to the serpin family.
   
 0.760
F5
Coagulation factor V; Belongs to the multicopper oxidase family.
   
 0.694
CLEC3B
Tetranectin.
    
 0.676
F8
Coagulation factor VIII; Belongs to the multicopper oxidase family.
   
 0.656
SERPINA10
Protein Z-dependent protease inhibitor; Belongs to the serpin family.
   
 0.631
TFPI
Tissue factor pathway inhibitor.
    
 0.564
EGLN3
Egl nine-like protein 3.
    
 
 0.561
MET
Hepatocyte growth factor receptor.
    
  0.558
MET-2
Uncharacterized protein.
    
  0.558
FETUB-1
Fetuin-B isoform A.
   
 0.525
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.