GRAMD1A protein (Alligator mississippiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GRAMD1A

GRAM domain-containing protein 1A. (155 aa)

Predicted Functional Partners:

GRAMD1AL

0.900

SCN1B

0.673

RBM42

0.605

PSMC4

0.509

TPCN3

0.453

TTC37

0.453

SCN2A

0.437

CACNA1E-2

0.437

TPCN1

0.437

NALCN-2

0.437

Your Current Organism:

Alligator mississippiensis

NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CACNA1E-2	GRAMD1A	A0A151MIB9	A0A151N8I7	Voltage-dependent R-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1E gives rise to R-type calcium currents.	GRAM domain-containing protein 1A.	0.437
CACNA1E-2	GRAMD1AL	A0A151MIB9	A0A151P1M0	Voltage-dependent R-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1E gives rise to R-type calcium currents.	GRAM domain-containing protein 1A.	0.437
CACNA1E-2	SCN1B	A0A151MIB9	A0A151NLD3	Voltage-dependent R-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1E gives rise to R-type calcium currents.	Sodium channel subunit beta-1.	0.724
GRAMD1A	CACNA1E-2	A0A151N8I7	A0A151MIB9	GRAM domain-containing protein 1A.	Voltage-dependent R-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1E gives rise to R-type calcium currents.	0.437
GRAMD1A	GRAMD1AL	A0A151N8I7	A0A151P1M0	GRAM domain-containing protein 1A.	GRAM domain-containing protein 1A.	0.900
GRAMD1A	NALCN-2	A0A151N8I7	A0A151NRK5	GRAM domain-containing protein 1A.	Uncharacterized protein.	0.437
GRAMD1A	PSMC4	A0A151N8I7	A0A151NHC2	GRAM domain-containing protein 1A.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.509
GRAMD1A	RBM42	A0A151N8I7	A0A151NT44	GRAM domain-containing protein 1A.	RNA-binding protein 42.	0.605
GRAMD1A	SCN1B	A0A151N8I7	A0A151NLD3	GRAM domain-containing protein 1A.	Sodium channel subunit beta-1.	0.673
GRAMD1A	SCN2A	A0A151N8I7	A0A151M084	GRAM domain-containing protein 1A.	Uncharacterized protein.	0.437
GRAMD1A	TPCN1	A0A151N8I7	A0A151N502	GRAM domain-containing protein 1A.	Two pore calcium channel protein 1.	0.437
GRAMD1A	TPCN3	A0A151N8I7	A0A151M1T1	GRAM domain-containing protein 1A.	Two-pore calcium channel 3.	0.453
GRAMD1A	TTC37	A0A151N8I7	A0A151PI05	GRAM domain-containing protein 1A.	Tetratricopeptide repeat protein 37.	0.453
GRAMD1AL	CACNA1E-2	A0A151P1M0	A0A151MIB9	GRAM domain-containing protein 1A.	Voltage-dependent R-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1E gives rise to R-type calcium currents.	0.437
GRAMD1AL	GRAMD1A	A0A151P1M0	A0A151N8I7	GRAM domain-containing protein 1A.	GRAM domain-containing protein 1A.	0.900
GRAMD1AL	NALCN-2	A0A151P1M0	A0A151NRK5	GRAM domain-containing protein 1A.	Uncharacterized protein.	0.437
GRAMD1AL	PSMC4	A0A151P1M0	A0A151NHC2	GRAM domain-containing protein 1A.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.509
GRAMD1AL	RBM42	A0A151P1M0	A0A151NT44	GRAM domain-containing protein 1A.	RNA-binding protein 42.	0.605
GRAMD1AL	SCN1B	A0A151P1M0	A0A151NLD3	GRAM domain-containing protein 1A.	Sodium channel subunit beta-1.	0.748
GRAMD1AL	SCN2A	A0A151P1M0	A0A151M084	GRAM domain-containing protein 1A.	Uncharacterized protein.	0.437