STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHF23-1PHD finger protein 23. (297 aa)    
Predicted Functional Partners:
MCRS1
Microspherule protein 1.
   
 0.788
KANSL2
KAT8 regulatory NSL complex subunit 2.
    
 0.751
TEX30
Testis-expressed sequence 30 protein.
    
 0.708
KANSL3
KAT8 regulatory NSL complex subunit 3 isoform B.
    
 0.708
Y1Q_0001537
HDAC_interact domain-containing protein.
    
 0.483
NWD1
Tetraspanin.
    
 0.483
SUDS3
Sin3 histone deacetylase corepressor complex component SDS3.
    
 
 0.482
BRMS1L
Breast cancer metastasis-suppressor 1-like protein.
    
 
 0.482
RBBP5
Retinoblastoma-binding protein 5 isoform B.
    
 0.480
TTC6
Tetratricopeptide repeat protein 6 isoform C.
   
 0.449
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.