STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Y1Q_0005374Serine/arginine repetitive matrix protein 2-like. (291 aa)    
Predicted Functional Partners:
CWC22
Pre-mRNA-splicing factor CWC22-like protein.
    
 0.928
CDC40
Pre-mRNA-processing factor 17.
   
 0.923
DHX38
Uncharacterized protein.
    
 0.914
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.892
SRRM1
Serine/arginine repetitive matrix protein 1 isoform A.
   
 0.884
CCDC94
Coiled-coil domain-containing protein 94.
   
 0.871
CWC25
Pre-mRNA-splicing factor CWC25-like protein.
   
 0.865
SNRPF
Small nuclear ribonucleoprotein F.
    
 0.855
CDC5L
Cell division cycle 5-like protein.
   
 
 0.854
SNRPD1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.846
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.