STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NPTXRNeuronal pentraxin receptor. (502 aa)    
Predicted Functional Partners:
RNF2
E3 ubiquitin-protein ligase RING2 isoform B.
    
 0.699
RING1
E3 ubiquitin-protein ligase RING1.
    
 0.699
EED
Polycomb protein EED.
    
 0.504
PCGF3-1
Polycomb group RING finger protein 3 isoform A.
    
 0.476
PCGF6
Polycomb group RING finger protein 6.
    
 0.476
PCGF5
Polycomb group RING finger protein 5.
    
 0.476
PCGF2
Polycomb group RING finger protein 2 isoform B.
    
 0.476
BMI1
Polycomb complex protein BMI-1.
    
 0.476
PCGF1
Polycomb group RING finger protein 1.
    
 0.476
SUZ12
Polycomb protein SUZ12.
     
 0.423
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.