STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Rho GTPase-activating protein SYDE1. (996 aa)    
Predicted Functional Partners:
RASL11B
Ras-like protein family member 11B isoform A.
    
 0.661
MYO9B
Unconventional myosin-IXb isoform B; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.590
MYO9B-2
Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.590
ELP4
Elongator complex protein 4.
      
 0.581
RHOG
Rho-related GTP-binding protein RhoG.
   
 0.524
RAC1
Ras-related C3 botulinum toxin substrate 1.
   
 0.492
RAC2
Uncharacterized protein.
   
 0.492
CNKSR1
Connector enhancer of kinase suppressor of ras 1.
      
 0.481
RHOU
Rho-related GTP-binding protein RhoU.
   
 0.455
RHOV
Rho-related GTP-binding protein RhoV.
   
 0.455
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.