STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMD13Sterile alpha motif domain-containing protein 13 isoform C. (130 aa)    
Predicted Functional Partners:
TRRAP
Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.
   
 0.764
RUVBL1
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.
   
 0.760
DMAP1
DNA methyltransferase 1-associated protein 1.
   
 0.693
WRN
Werner syndrome ATP-dependent helicase.
    
 0.655
OGFR
Opioid growth factor receptor.
    
 0.638
EPC2
Enhancer of polycomb homolog.
   
 0.618
EPC1
E_Pc_C domain-containing protein.
   
 0.618
BRPF1
Uncharacterized protein.
    
 0.604
MAPK13
Mitogen-activated protein kinase.
    
 0.604
BRD1
Uncharacterized protein.
    
 0.604
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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