STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPF1Ribosome production factor 1. (332 aa)    
Predicted Functional Partners:
WDR74
WD repeat-containing protein 74.
   
 
 0.994
MAK16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
 
 0.994
BRIX1
Ribosome biogenesis BRX1-like protein.
   
 
 0.993
EBNA1BP2
Putative rRNA-processing protein EBP2.
   
 
 0.986
RPF2
Ribosome production factor 2-like protein.
   
 
 0.980
NOC2L
Nucleolar complex 2-like protein.
   
 
 0.980
NIP7
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.980
RRP1B
Ribosomal RNA processing 1-like protein B.
   
 
 0.978
RSL1D1
Ribosomal L1 domain-containing protein 1.
   
 
 0.973
PPAN
Suppressor of SWI4 1-like protein.
   
 
 0.970
Your Current Organism:
Alligator mississippiensis
NCBI taxonomy Id: 8496
Other names: A. mississippiensis, American alligator
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.